STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHK_1020Transcriptional regulator, DeoR family. (118 aa)    
Predicted Functional Partners:
CHK_1021
Transcriptional regulator, DeoR family.
     0.991
CHK_1017
Pyruvate formate-lyase.
  
     0.659
CHK_2970
Pyruvate formate-lyase.
  
     0.554
CHK_1022
Ribose ABC transport system, permease protein RbsC; TCDB 3.A.1.2.1; Belongs to the binding-protein-dependent transport system permease family.
       0.478
CHK_1023
Ribose ABC transport system, permease protein RbsC; TCDB 3.A.1.2.1; Belongs to the binding-protein-dependent transport system permease family.
       0.469
CHK_0781
DeoR-family transcriptional regulator.
  
     0.442
CHK_1024
Ribose ABC transport system, ATP-binding protein RbsA; TCDB 3.A.1.2.1.
       0.440
CHK_2552
Putative regulator of fructose utilization, DeoR family.
  
     0.400
Your Current Organism:
Catabacter hongkongensis
NCBI taxonomy Id: 270498
Other names: C. hongkongensis, CCUG 54229, Catabacter hongkongensis Lau et al. 2014, JCM 17853, strain HKU16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.