STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHK_1021Transcriptional regulator, DeoR family. (135 aa)    
Predicted Functional Partners:
CHK_1020
Transcriptional regulator, DeoR family.
     0.991
CHK_3086
Transcriptional repressor of the fructose operon, DeoR family.
  
     0.758
CHK_0628
Transcriptional regulator, DeoR family.
  
     0.749
CHK_2688
Regulatory protein, DeoR.
  
     0.724
CHK_1017
Pyruvate formate-lyase.
  
   0.670
CHK_1296
1-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
  
  
 0.609
CHK_2247
Ribose 5-phosphate isomerase B.
  
 
 0.592
CHK_2970
Pyruvate formate-lyase.
  
   0.583
CHK_1022
Ribose ABC transport system, permease protein RbsC; TCDB 3.A.1.2.1; Belongs to the binding-protein-dependent transport system permease family.
       0.538
CHK_1023
Ribose ABC transport system, permease protein RbsC; TCDB 3.A.1.2.1; Belongs to the binding-protein-dependent transport system permease family.
       0.527
Your Current Organism:
Catabacter hongkongensis
NCBI taxonomy Id: 270498
Other names: C. hongkongensis, CCUG 54229, Catabacter hongkongensis Lau et al. 2014, JCM 17853, strain HKU16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.