STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHK_1037Hypothetical protein. (148 aa)    
Predicted Functional Partners:
CHK_1308
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.907
CHK_1038
Hypothetical protein.
       0.701
CHK_1039
2,4-dienoyl-CoA reductase [NADPH].
  
  
 0.669
atpA
ATP synthase alpha chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
   
 
 0.622
CHK_1075
NAD-reducing hydrogenase subunit HoxF.
  
 
 0.607
CHK_1040
Myo-inositol 2-dehydrogenase 1.
  
    0.598
trpB
Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
   
  0.546
CHK_1041
Lyase; Dioxygenase.
 
    
0.545
CHK_1042
Dihydrolipoamide dehydrogenase.
  
 
 0.542
birA
Biotin--protein ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
 
    0.518
Your Current Organism:
Catabacter hongkongensis
NCBI taxonomy Id: 270498
Other names: C. hongkongensis, CCUG 54229, Catabacter hongkongensis Lau et al. 2014, JCM 17853, strain HKU16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.