Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CHK_1069Hypothetical protein. (242 aa)    
Predicted Functional Partners:
CHK_1070
Bsu YqfO NIF3/CutA domain; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
  
  
 0.948
CHK_1002
Osmosensitive K+ channel histidine kinase KdpD.
    
  0.862
CHK_1004
Sensory box histidine kinase/response regulator.
    
  0.862
CHK_1975
Chemotaxis protein CheV.
    
  0.831
CHK_1071
Putative tRNA-m1A22 methylase.
       0.776
CHK_0176
Hypothetical protein.
  
     0.748
CHK_0547
Sensory box histidine kinase/response regulator.
    
  0.743
CHK_0021
Putative internalin.
  
     0.716
CHK_0577
Collagen adhesion protein.
  
 
  0.712
CHK_0072
Putative calcium binding hemolysin protein.
 
     0.692
Your Current Organism:
Catabacter hongkongensis
NCBI taxonomy Id: 270498
Other names: C. hongkongensis, CCUG 54229, Catabacter hongkongensis Lau et al. 2014, JCM 17853, strain HKU16
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