STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHK_1113Extracellular protein. (280 aa)    
Predicted Functional Partners:
CHK_0160
Hypothetical protein.
 
     0.603
CHK_2457
Teichoic acid export ATP-binding protein TagH.
   
    0.589
coaD
Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
   
    0.563
CHK_1114
Oxygen-independent coproporphyrinogen III oxidase, Fe-S oxidoreductase.
       0.499
CHK_3138
ABC transporter, ATP-binding protein.
   
    0.440
CHK_2456
O-antigen export system permease protein RfbD.
   
    0.434
CHK_1406
Cell division protein FtsI.
 
     0.420
CHK_2695
Putative N6-adenine-specific RNA methylase containing THUMP domain.
  
     0.401
Your Current Organism:
Catabacter hongkongensis
NCBI taxonomy Id: 270498
Other names: C. hongkongensis, CCUG 54229, Catabacter hongkongensis Lau et al. 2014, JCM 17853, strain HKU16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.