Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CHK_1573 | CHK_1574 | CHK_1573 | CHK_1574 | RNA-binding protein Jag. | Inner membrane protein translocase component YidC, short form OxaI-like. | 0.956 |
| CHK_1573 | CHK_1575 | CHK_1573 | CHK_1575 | RNA-binding protein Jag. | Protein YidD; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.911 |
| CHK_1573 | mnmE | CHK_1573 | CHK_1572 | RNA-binding protein Jag. | GTPase and tRNA-U34 5-formylation enzyme TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | 0.744 |
| CHK_1573 | mnmG | CHK_1573 | CHK_1571 | RNA-binding protein Jag. | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | 0.737 |
| CHK_1573 | rnpA | CHK_1573 | CHK_1576 | RNA-binding protein Jag. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.916 |
| CHK_1573 | rpmH | CHK_1573 | CHK_1577 | RNA-binding protein Jag. | LSU ribosomal protein L34p; Belongs to the bacterial ribosomal protein bL34 family. | 0.802 |
| CHK_1574 | CHK_1573 | CHK_1574 | CHK_1573 | Inner membrane protein translocase component YidC, short form OxaI-like. | RNA-binding protein Jag. | 0.956 |
| CHK_1574 | CHK_1575 | CHK_1574 | CHK_1575 | Inner membrane protein translocase component YidC, short form OxaI-like. | Protein YidD; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.959 |
| CHK_1574 | ispH | CHK_1574 | CHK_2915 | Inner membrane protein translocase component YidC, short form OxaI-like. | SSU ribosomal protein S1p; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family. | 0.734 |
| CHK_1574 | mnmE | CHK_1574 | CHK_1572 | Inner membrane protein translocase component YidC, short form OxaI-like. | GTPase and tRNA-U34 5-formylation enzyme TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | 0.802 |
| CHK_1574 | mnmG | CHK_1574 | CHK_1571 | Inner membrane protein translocase component YidC, short form OxaI-like. | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | 0.880 |
| CHK_1574 | rnpA | CHK_1574 | CHK_1576 | Inner membrane protein translocase component YidC, short form OxaI-like. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.968 |
| CHK_1574 | rplD | CHK_1574 | CHK_1623 | Inner membrane protein translocase component YidC, short form OxaI-like. | LSU ribosomal protein L4p (L1e); Forms part of the polypeptide exit tunnel. | 0.730 |
| CHK_1574 | rpmH | CHK_1574 | CHK_1577 | Inner membrane protein translocase component YidC, short form OxaI-like. | LSU ribosomal protein L34p; Belongs to the bacterial ribosomal protein bL34 family. | 0.911 |
| CHK_1575 | CHK_1573 | CHK_1575 | CHK_1573 | Protein YidD; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | RNA-binding protein Jag. | 0.911 |
| CHK_1575 | CHK_1574 | CHK_1575 | CHK_1574 | Protein YidD; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Inner membrane protein translocase component YidC, short form OxaI-like. | 0.959 |
| CHK_1575 | ispH | CHK_1575 | CHK_2915 | Protein YidD; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | SSU ribosomal protein S1p; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family. | 0.405 |
| CHK_1575 | mnmE | CHK_1575 | CHK_1572 | Protein YidD; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | GTPase and tRNA-U34 5-formylation enzyme TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | 0.696 |
| CHK_1575 | mnmG | CHK_1575 | CHK_1571 | Protein YidD; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | 0.685 |
| CHK_1575 | rnpA | CHK_1575 | CHK_1576 | Protein YidD; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.979 |
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