STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHK_1656Multi antimicrobial extrusion protein (Na(+)/drug antiporter); MATE family of MDR efflux pump. (479 aa)    
Predicted Functional Partners:
CHK_1655
Hypothetical protein.
       0.773
CHK_0872
Multi antimicrobial extrusion protein (Na(+)/drug antiporter); MATE family of MDR efflux pump.
  
   
 0.672
CHK_0318
Multi antimicrobial extrusion protein (Na(+)/drug antiporter); MATE family of MDR efflux pump.
  
   
 0.608
CHK_0239
Multi antimicrobial extrusion protein (Na(+)/drug antiporter); MATE family of MDR efflux pump.
  
   
 0.569
CHK_1340
Multi antimicrobial extrusion protein (Na(+)/drug antiporter); MATE family of MDR efflux pump.
  
   
 0.538
CHK_1724
Multi antimicrobial extrusion protein (Na(+)/drug antiporter); MATE family of MDR efflux pump.
  
   
 0.532
CHK_1426
Multi antimicrobial extrusion protein (Na(+)/drug antiporter); MATE family of MDR efflux pump.
  
   
 0.527
ispH
SSU ribosomal protein S1p; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
  
  
 0.510
CHK_1654
Putative glycosyltransferase protein.
 
    0.495
CHK_0069
NAD(P)-dependent glyceraldehyde 3-phosphate dehydrogenase archaeal.
  
    0.466
Your Current Organism:
Catabacter hongkongensis
NCBI taxonomy Id: 270498
Other names: C. hongkongensis, CCUG 54229, Catabacter hongkongensis Lau et al. 2014, JCM 17853, strain HKU16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.