STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHK_1831Putative D-erythrulose 4-phosphate dehydrogenase EryC. (390 aa)    
Predicted Functional Partners:
CHK_1830
Rhamnulokinase.
  
 
  0.790
CHK_1873
Hypothetical protein.
  
     0.686
CHK_3218
Collagen adhesion protein.
  
     0.575
CHK_1829
Hypothetical protein.
       0.572
CHK_1832
Ribose ABC transport system, ATP-binding protein RbsA; TCDB 3.A.1.2.1.
  
    0.557
CHK_1833
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component 2.
  
    0.515
CHK_1834
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component 1.
  
    0.474
CHK_1030
Co-activator of prophage expression IbrA.
  
     0.464
CHK_3219
Collagen adhesion protein.
  
     0.449
CHK_2329
Transcriptional regulator, XRE family.
  
    0.422
Your Current Organism:
Catabacter hongkongensis
NCBI taxonomy Id: 270498
Other names: C. hongkongensis, CCUG 54229, Catabacter hongkongensis Lau et al. 2014, JCM 17853, strain HKU16
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.