STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHK_2012Hypothetical protein. (359 aa)    
Predicted Functional Partners:
CHK_2011
Putative L-rhamnose ABC transporter, transmembrane component 1; Belongs to the binding-protein-dependent transport system permease family.
 
     0.817
CHK_2013
Hypothetical protein; Similar to photosystem I assembly BtpA.
 
     0.807
CHK_2015
D-tagatose 3-epimerase.
 
    0.796
rbsK-2
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
     0.790
CHK_2010
Ribose ABC transport system, permease protein RbsC; TCDB 3.A.1.2.1; Belongs to the binding-protein-dependent transport system permease family.
 
     0.770
CHK_2009
Ribose ABC transport system, ATP-binding protein RbsA; TCDB 3.A.1.2.1.
 
     0.731
CHK_2008
Putative ABC transporter periplasmic sugar-binding protein.
 
     0.715
CHK_2548
Deoxyribonucleoside regulator DeoR (transcriptional repressor).
 
     0.521
CHK_3041
Deoxyribonucleoside regulator DeoR (transcriptional repressor).
 
     0.483
CHK_0997
Sorbitol operon transcription regulator.
 
     0.444
Your Current Organism:
Catabacter hongkongensis
NCBI taxonomy Id: 270498
Other names: C. hongkongensis, CCUG 54229, Catabacter hongkongensis Lau et al. 2014, JCM 17853, strain HKU16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.