STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHK_2034Encapsulating protein for a DyP-type peroxidase; Ferritin-like protein oligomer. (270 aa)    
Predicted Functional Partners:
CHK_2033
Ferritin-like di-iron-carboxylate protein.
 
     0.953
CHK_2032
Hypothetical protein.
       0.737
CHK_2031
Hypothetical protein.
       0.654
CHK_2036
Oxidoreductase of aldo/keto reductase family, subgroup 1.
       0.586
CHK_2037
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
       0.574
CHK_2030
Putative N-terminal signal sequence.
       0.490
CHK_0500
GCN5-related N-acetyltransferase.
  
     0.438
Your Current Organism:
Catabacter hongkongensis
NCBI taxonomy Id: 270498
Other names: C. hongkongensis, CCUG 54229, Catabacter hongkongensis Lau et al. 2014, JCM 17853, strain HKU16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.