STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHK_2205ABC transporter (iron.B12.siderophore.hemin), periplasmic substrate-binding component. (353 aa)    
Predicted Functional Partners:
CHK_2206
Vitamin B12 ABC transporter, permease component BtuC; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.994
CHK_2207
Vitamin B12 ABC transporter, ATPase component BtuD.
 0.991
CHK_1501
Vitamin B12 ABC transporter, permease component BtuC; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.972
CHK_1500
Iron(III) dicitrate transport ATP-binding protein FecE; TCDB 3.A.1.14.1.
 
 0.922
CHK_2328
Hypothetical protein.
  
 0.839
CHK_0122
Uroporphyrinogen-III synthase.
     
 0.564
CHK_1308
Pyruvate-flavodoxin oxidoreductase.
  
   0.507
CHK_2204
ABC transporter (iron.B12.siderophore.hemin), periplasmic substrate-binding component.
 
    
0.503
hisI
Phosphoribosyl-AMP cyclohydrolase; Phosphoribosyl-ATP pyrophosphatase; In the N-terminal section; belongs to the PRA-CH family.
   
   0.467
CHK_0118
Cobalt-precorrin-6y C15-methyltransferase [decarboxylating].
     
 0.451
Your Current Organism:
Catabacter hongkongensis
NCBI taxonomy Id: 270498
Other names: C. hongkongensis, CCUG 54229, Catabacter hongkongensis Lau et al. 2014, JCM 17853, strain HKU16
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