STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHK_2457Teichoic acid export ATP-binding protein TagH. (426 aa)    
Predicted Functional Partners:
CHK_2456
O-antigen export system permease protein RfbD.
 
 0.999
CHK_1690
Glycosyl transferase, group 2 family protein.
 
  
 0.874
CHK_2455
Mannosyltransferase WboB.
 
 
 0.873
CHK_2454
Glycosyltransferase.
 
 
 0.865
CHK_2453
Glycosyl transferase, group 1 family protein LpsD.
  
 
 0.819
CHK_2451
GDP-mannose 4,6-dehydratase.
  
 0.797
CHK_2452
Methyltransferase, FkbM family domain protein.
 
     0.791
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
 
  
 0.639
CHK_2211
Competence protein F, phosphoribosyltransferase domain; Protein YhgH required for utilization of DNA as sole source of carbon and energy.
   
    0.593
CHK_1113
Extracellular protein.
   
    0.589
Your Current Organism:
Catabacter hongkongensis
NCBI taxonomy Id: 270498
Other names: C. hongkongensis, CCUG 54229, Catabacter hongkongensis Lau et al. 2014, JCM 17853, strain HKU16
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.