STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHK_2466Glycosyltransferase. (328 aa)    
Predicted Functional Partners:
CHK_2467
Hypothetical protein.
  
 
 0.825
CHK_2469
UDP-glucose dehydrogenase.
  
  
 0.816
CHK_2468
Cell wall teichoic acid glycosylation protein GtcA.
 
     0.807
CHK_2463
Glycosyl transferase, family 2.
  
     0.622
CHK_0929
Carotenoid cis-trans isomerase.
 
  
 0.512
CHK_1649
Glycosyl transferase, group 2 family protein.
 
 
 0.493
CHK_0292
Hypothetical protein.
  
 
 0.461
CHK_2470
Hypothetical protein.
  
  
 0.460
CHK_2890
Hypothetical protein.
  
 0.451
CHK_1690
Glycosyl transferase, group 2 family protein.
 
 
 0.448
Your Current Organism:
Catabacter hongkongensis
NCBI taxonomy Id: 270498
Other names: C. hongkongensis, CCUG 54229, Catabacter hongkongensis Lau et al. 2014, JCM 17853, strain HKU16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.