STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHK_2481Transcriptional regulator, AraC family. (270 aa)    
Predicted Functional Partners:
CHK_1308
Pyruvate-flavodoxin oxidoreductase.
     
 0.849
CHK_2260
Transcriptional regulator, AraC family.
 
   0.808
CHK_2833
Two-component response regulator yesN.
  
  
  0.794
CHK_1876
Transcriptional regulator, AraC family.
  
     0.744
CHK_1848
Transcriptional regulator of rhamnose utilization, AraC family.
  
  
  0.725
CHK_2482
Ribose ABC transport system, ATP-binding protein RbsA; TCDB 3.A.1.2.1.
       0.459
CHK_2271
Two-component response regulator yesN.
 
  
0.439
CHK_3160
DNA-binding response regulator, AraC family.
 
  
0.439
CHK_1862
Transcriptional regulator, AraC family.
 
  
0.437
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.401
Your Current Organism:
Catabacter hongkongensis
NCBI taxonomy Id: 270498
Other names: C. hongkongensis, CCUG 54229, Catabacter hongkongensis Lau et al. 2014, JCM 17853, strain HKU16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.