STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHK_2495Wall-associated protein precursor. (213 aa)    
Predicted Functional Partners:
CHK_2494
Wall-associated protein.
      0.639
CHK_0028
Exopolysaccharide biosynthesis domain protein.
  
 
 0.570
CHK_0354
Extracellular protein.
  
 
 0.570
CHK_2714
ABC transporter permease protein.
  
 
 0.518
CHK_1645
RND multidrug efflux transporter; Acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 
 0.471
CHK_0518
Hypothetical protein.
  
 
 0.463
smc
Chromosome partition protein smc; Required for chromosome condensation and partitioning. Belongs to the SMC family.
  
 
 0.463
CHK_1973
Flagellin protein FlaA; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
     
 0.420
CHK_1998
Flagellar hook-associated protein FlgL.
     
 0.420
CHK_0145
Cell wall endopeptidase, family M23/M37.
     
 0.413
Your Current Organism:
Catabacter hongkongensis
NCBI taxonomy Id: 270498
Other names: C. hongkongensis, CCUG 54229, Catabacter hongkongensis Lau et al. 2014, JCM 17853, strain HKU16
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