fucI protein (Catabacter hongkongensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

fucI

L-fucose isomerase; Converts the aldose L-fucose into the corresponding ketose L- fuculose. (585 aa)

Predicted Functional Partners:

CHK_0046

0.827

CHK_1830

0.826

CHK_1846

0.759

CHK_0311

0.743

CHK_0294

0.686

CHK_3159

0.643

CHK_0226

0.635

CHK_0367

0.635

CHK_1434

0.635

CHK_2534

0.616

Your Current Organism:

Catabacter hongkongensis

NCBI taxonomy Id: 270498
Other names: C. hongkongensis, CCUG 54229, Catabacter hongkongensis Lau et al. 2014, JCM 17853, strain HKU16

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHK_0046	fucI	CHK_0046	CHK_2651	L-fuculokinase.	L-fucose isomerase; Converts the aldose L-fucose into the corresponding ketose L- fuculose.	0.827
CHK_0226	CHK_2534	CHK_0226	CHK_2534	Putative sugar kinase, PfkB family protein.	Ribokinase.	0.519
CHK_0226	fucI	CHK_0226	CHK_2651	Putative sugar kinase, PfkB family protein.	L-fucose isomerase; Converts the aldose L-fucose into the corresponding ketose L- fuculose.	0.635
CHK_0294	CHK_2534	CHK_0294	CHK_2534	Putative sugar kinase, PfkB family protein.	Ribokinase.	0.564
CHK_0294	fucI	CHK_0294	CHK_2651	Putative sugar kinase, PfkB family protein.	L-fucose isomerase; Converts the aldose L-fucose into the corresponding ketose L- fuculose.	0.686
CHK_0311	CHK_3159	CHK_0311	CHK_3159	L-fucose mutarotase; Belongs to the RbsD / FucU family.	Xylulose kinase.	0.614
CHK_0311	fucI	CHK_0311	CHK_2651	L-fucose mutarotase; Belongs to the RbsD / FucU family.	L-fucose isomerase; Converts the aldose L-fucose into the corresponding ketose L- fuculose.	0.743
CHK_0367	CHK_2534	CHK_0367	CHK_2534	Fructokinase.	Ribokinase.	0.553
CHK_0367	fucI	CHK_0367	CHK_2651	Fructokinase.	L-fucose isomerase; Converts the aldose L-fucose into the corresponding ketose L- fuculose.	0.635
CHK_1434	fucI	CHK_1434	CHK_2651	Ribokinase.	L-fucose isomerase; Converts the aldose L-fucose into the corresponding ketose L- fuculose.	0.635
CHK_1830	fucI	CHK_1830	CHK_2651	Rhamnulokinase.	L-fucose isomerase; Converts the aldose L-fucose into the corresponding ketose L- fuculose.	0.826
CHK_1846	fucI	CHK_1846	CHK_2651	Rhamnulokinase.	L-fucose isomerase; Converts the aldose L-fucose into the corresponding ketose L- fuculose.	0.759
CHK_2534	CHK_0226	CHK_2534	CHK_0226	Ribokinase.	Putative sugar kinase, PfkB family protein.	0.519
CHK_2534	CHK_0294	CHK_2534	CHK_0294	Ribokinase.	Putative sugar kinase, PfkB family protein.	0.564
CHK_2534	CHK_0367	CHK_2534	CHK_0367	Ribokinase.	Fructokinase.	0.553
CHK_2534	fucI	CHK_2534	CHK_2651	Ribokinase.	L-fucose isomerase; Converts the aldose L-fucose into the corresponding ketose L- fuculose.	0.616
CHK_3159	CHK_0311	CHK_3159	CHK_0311	Xylulose kinase.	L-fucose mutarotase; Belongs to the RbsD / FucU family.	0.614
CHK_3159	fucI	CHK_3159	CHK_2651	Xylulose kinase.	L-fucose isomerase; Converts the aldose L-fucose into the corresponding ketose L- fuculose.	0.643
fucI	CHK_0046	CHK_2651	CHK_0046	L-fucose isomerase; Converts the aldose L-fucose into the corresponding ketose L- fuculose.	L-fuculokinase.	0.827
fucI	CHK_0226	CHK_2651	CHK_0226	L-fucose isomerase; Converts the aldose L-fucose into the corresponding ketose L- fuculose.	Putative sugar kinase, PfkB family protein.	0.635

page 1 of 2

Server load: low (22%) [HD]

Permalink

Network

Neighborhood

Databases

Cooccurrence

Textmining

Coexpression

Experiments

Fusion

© STRING Consortium 2023

Credits

Access

Info

About