STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHK_2713ABC transporter ATP-binding protein YvcR. (234 aa)    
Predicted Functional Partners:
CHK_2714
ABC transporter permease protein.
 
 0.998
CHK_1487
Large transmembrane protein involved in transport.
 
 0.995
CHK_2781
Macrolide export ATP-binding/permease protein MacB.
 0.964
CHK_0303
ABC transporter, permease protein.
 0.961
CHK_1670
Cell division protein FtsX.
 0.714
CHK_1299
Cell division protein FtsX.
 0.704
CHK_2155
Spermidine Putrescine ABC transporter permease component PotB; TCDB 3.A.1.11.1.
   
  0.676
CHK_3079
Cell division protein FtsX.
 0.635
CHK_0190
ABC transporter permease protein.
  
 0.629
CHK_2062
ABC-type multidrug/protein/lipid transport system, ATPase component.
     
0.588
Your Current Organism:
Catabacter hongkongensis
NCBI taxonomy Id: 270498
Other names: C. hongkongensis, CCUG 54229, Catabacter hongkongensis Lau et al. 2014, JCM 17853, strain HKU16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.