Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CHK_0376 | CHK_2837 | CHK_0376 | CHK_2837 | Hypothetical protein. | Serine/threonine protein kinase PrkC, regulator of stationary phase. | 0.566 |
CHK_0376 | CHK_2929 | CHK_0376 | CHK_2929 | Hypothetical protein. | Hypothetical protein. | 0.512 |
CHK_2837 | CHK_0376 | CHK_2837 | CHK_0376 | Serine/threonine protein kinase PrkC, regulator of stationary phase. | Hypothetical protein. | 0.566 |
CHK_2837 | CHK_2929 | CHK_2837 | CHK_2929 | Serine/threonine protein kinase PrkC, regulator of stationary phase. | Hypothetical protein. | 0.450 |
CHK_2837 | topA | CHK_2837 | CHK_2893 | Serine/threonine protein kinase PrkC, regulator of stationary phase. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.419 |
CHK_2928 | CHK_2929 | CHK_2928 | CHK_2929 | Hypothetical protein. | Hypothetical protein. | 0.581 |
CHK_2929 | CHK_0376 | CHK_2929 | CHK_0376 | Hypothetical protein. | Hypothetical protein. | 0.512 |
CHK_2929 | CHK_2837 | CHK_2929 | CHK_2837 | Hypothetical protein. | Serine/threonine protein kinase PrkC, regulator of stationary phase. | 0.450 |
CHK_2929 | CHK_2928 | CHK_2929 | CHK_2928 | Hypothetical protein. | Hypothetical protein. | 0.581 |
CHK_2929 | CHK_2930 | CHK_2929 | CHK_2930 | Hypothetical protein. | Type I restriction-modification system, restriction subunit R. | 0.475 |
CHK_2929 | CHK_2931 | CHK_2929 | CHK_2931 | Hypothetical protein. | Type I restriction-modification system, DNA-methyltransferase subunit M. | 0.448 |
CHK_2929 | CHK_2932 | CHK_2929 | CHK_2932 | Hypothetical protein. | Type I restriction-modification system, specificity subunit S. | 0.464 |
CHK_2929 | CHK_2933 | CHK_2929 | CHK_2933 | Hypothetical protein. | Putative Zn peptidase. | 0.448 |
CHK_2929 | rpoB | CHK_2929 | CHK_0728 | Hypothetical protein. | DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.426 |
CHK_2929 | rpoC | CHK_2929 | CHK_0727 | Hypothetical protein. | DNA-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.444 |
CHK_2929 | topA | CHK_2929 | CHK_2893 | Hypothetical protein. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.437 |
CHK_2930 | CHK_2929 | CHK_2930 | CHK_2929 | Type I restriction-modification system, restriction subunit R. | Hypothetical protein. | 0.475 |
CHK_2930 | CHK_2931 | CHK_2930 | CHK_2931 | Type I restriction-modification system, restriction subunit R. | Type I restriction-modification system, DNA-methyltransferase subunit M. | 0.990 |
CHK_2930 | CHK_2932 | CHK_2930 | CHK_2932 | Type I restriction-modification system, restriction subunit R. | Type I restriction-modification system, specificity subunit S. | 0.991 |
CHK_2930 | CHK_2933 | CHK_2930 | CHK_2933 | Type I restriction-modification system, restriction subunit R. | Putative Zn peptidase. | 0.737 |
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