STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHK_2969Putative sugar kinase. (317 aa)    
Predicted Functional Partners:
CHK_1329
Xylose-responsive transcription regulator, ROK family.
  
     0.770
CHK_2475
Mannose-6-phosphate isomerase.
 
 
 0.735
CHK_2247
Ribose 5-phosphate isomerase B.
  
 
 0.707
CHK_2970
Pyruvate formate-lyase.
  
    0.664
CHK_2971
Pyruvate formate-lyase activating enzyme.
       0.661
CHK_2972
Ribose operon repressor.
       0.652
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
 
 
 0.571
CHK_2973
Ribose 5-phosphate isomerase B.
  
 
 0.565
CHK_2977
Ribulose-phosphate 3-epimerase.
  
 
 0.498
CHK_2968
Putative oxidoreductase.
       0.490
Your Current Organism:
Catabacter hongkongensis
NCBI taxonomy Id: 270498
Other names: C. hongkongensis, CCUG 54229, Catabacter hongkongensis Lau et al. 2014, JCM 17853, strain HKU16
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