STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHK_2974D-allose ABC transporter, substrate-binding component. (354 aa)    
Predicted Functional Partners:
CHK_1002
Osmosensitive K+ channel histidine kinase KdpD.
   
 0.911
CHK_1004
Sensory box histidine kinase/response regulator.
   
 0.911
CHK_0547
Sensory box histidine kinase/response regulator.
   
 0.878
CHK_2976
D-allose ABC transporter, permease component; Belongs to the binding-protein-dependent transport system permease family.
  0.864
CHK_3076
Ribose ABC transport system, high affinity permease RbsD; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
  
 0.859
CHK_1681
Sensory box histidine kinase/response regulator.
   
 0.834
CHK_2157
Sensory box histidine kinase/response regulator.
   
 0.834
CHK_0713
Ribose ABC transport system, periplasmic ribose-binding protein RbsB; TCDB 3.A.1.2.1.
  
     0.771
CHK_2698
Ribose ABC transport system, permease protein RbsC; TCDB 3.A.1.2.1; Belongs to the binding-protein-dependent transport system permease family.
 
  0.723
CHK_3073
Ribose ABC transport system, permease protein RbsC; TCDB 3.A.1.2.1; Belongs to the binding-protein-dependent transport system permease family.
 
  0.704
Your Current Organism:
Catabacter hongkongensis
NCBI taxonomy Id: 270498
Other names: C. hongkongensis, CCUG 54229, Catabacter hongkongensis Lau et al. 2014, JCM 17853, strain HKU16
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