CHK_3046 protein (Catabacter hongkongensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CHK_3046

Hypothetical protein. (56 aa)

Predicted Functional Partners:

tpiA-2

0.658

CHK_3047

0.658

CHK_3048

0.658

CHK_3049

0.496

CHK_3044

0.426

Your Current Organism:

Catabacter hongkongensis

NCBI taxonomy Id: 270498
Other names: C. hongkongensis, CCUG 54229, Catabacter hongkongensis Lau et al. 2014, JCM 17853, strain HKU16

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHK_3044	CHK_3046	CHK_3044	CHK_3046	Ribulokinase; Belongs to the FGGY kinase family.	Hypothetical protein.	0.426
CHK_3044	tpiA-2	CHK_3044	CHK_3045	Ribulokinase; Belongs to the FGGY kinase family.	Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.	0.490
CHK_3046	CHK_3044	CHK_3046	CHK_3044	Hypothetical protein.	Ribulokinase; Belongs to the FGGY kinase family.	0.426
CHK_3046	CHK_3047	CHK_3046	CHK_3047	Hypothetical protein.	Ribose ABC transport system, ATP-binding protein RbsA; TCDB 3.A.1.2.1.	0.658
CHK_3046	CHK_3048	CHK_3046	CHK_3048	Hypothetical protein.	Ribose ABC transport system, permease protein RbsC; TCDB 3.A.1.2.1; Belongs to the binding-protein-dependent transport system permease family.	0.658
CHK_3046	CHK_3049	CHK_3046	CHK_3049	Hypothetical protein.	Ribose ABC transport system, periplasmic ribose-binding protein RbsB; TCDB 3.A.1.2.1.	0.496
CHK_3046	tpiA-2	CHK_3046	CHK_3045	Hypothetical protein.	Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.	0.658
CHK_3047	CHK_3046	CHK_3047	CHK_3046	Ribose ABC transport system, ATP-binding protein RbsA; TCDB 3.A.1.2.1.	Hypothetical protein.	0.658
CHK_3047	CHK_3048	CHK_3047	CHK_3048	Ribose ABC transport system, ATP-binding protein RbsA; TCDB 3.A.1.2.1.	Ribose ABC transport system, permease protein RbsC; TCDB 3.A.1.2.1; Belongs to the binding-protein-dependent transport system permease family.	0.838
CHK_3047	CHK_3049	CHK_3047	CHK_3049	Ribose ABC transport system, ATP-binding protein RbsA; TCDB 3.A.1.2.1.	Ribose ABC transport system, periplasmic ribose-binding protein RbsB; TCDB 3.A.1.2.1.	0.703
CHK_3047	tpiA-2	CHK_3047	CHK_3045	Ribose ABC transport system, ATP-binding protein RbsA; TCDB 3.A.1.2.1.	Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.	0.563
CHK_3048	CHK_3046	CHK_3048	CHK_3046	Ribose ABC transport system, permease protein RbsC; TCDB 3.A.1.2.1; Belongs to the binding-protein-dependent transport system permease family.	Hypothetical protein.	0.658
CHK_3048	CHK_3047	CHK_3048	CHK_3047	Ribose ABC transport system, permease protein RbsC; TCDB 3.A.1.2.1; Belongs to the binding-protein-dependent transport system permease family.	Ribose ABC transport system, ATP-binding protein RbsA; TCDB 3.A.1.2.1.	0.838
CHK_3048	CHK_3049	CHK_3048	CHK_3049	Ribose ABC transport system, permease protein RbsC; TCDB 3.A.1.2.1; Belongs to the binding-protein-dependent transport system permease family.	Ribose ABC transport system, periplasmic ribose-binding protein RbsB; TCDB 3.A.1.2.1.	0.918
CHK_3048	tpiA-2	CHK_3048	CHK_3045	Ribose ABC transport system, permease protein RbsC; TCDB 3.A.1.2.1; Belongs to the binding-protein-dependent transport system permease family.	Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.	0.563
CHK_3049	CHK_3046	CHK_3049	CHK_3046	Ribose ABC transport system, periplasmic ribose-binding protein RbsB; TCDB 3.A.1.2.1.	Hypothetical protein.	0.496
CHK_3049	CHK_3047	CHK_3049	CHK_3047	Ribose ABC transport system, periplasmic ribose-binding protein RbsB; TCDB 3.A.1.2.1.	Ribose ABC transport system, ATP-binding protein RbsA; TCDB 3.A.1.2.1.	0.703
CHK_3049	CHK_3048	CHK_3049	CHK_3048	Ribose ABC transport system, periplasmic ribose-binding protein RbsB; TCDB 3.A.1.2.1.	Ribose ABC transport system, permease protein RbsC; TCDB 3.A.1.2.1; Belongs to the binding-protein-dependent transport system permease family.	0.918
CHK_3049	tpiA-2	CHK_3049	CHK_3045	Ribose ABC transport system, periplasmic ribose-binding protein RbsB; TCDB 3.A.1.2.1.	Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.	0.430
tpiA-2	CHK_3044	CHK_3045	CHK_3044	Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.	Ribulokinase; Belongs to the FGGY kinase family.	0.490