STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHK_3089L-sorbose 1-phosphate reductase. (418 aa)    
Predicted Functional Partners:
CHK_1308
Pyruvate-flavodoxin oxidoreductase.
    
 0.839
CHK_2726
Acetoin dehydrogenase E1 component beta-subunit.
 
 
 0.835
CHK_2545
Acetoin dehydrogenase E1 component beta-subunit.
 
 
 0.829
CHK_3087
Pyruvate formate-lyase activating enzyme.
       0.724
CHK_3088
Pyruvate formate-lyase.
       0.723
CHK_3086
Transcriptional repressor of the fructose operon, DeoR family.
       0.707
CHK_0048
Hypothetical protein.
  
     0.645
CHK_1295
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 
 0.638
CHK_1075
NAD-reducing hydrogenase subunit HoxF.
    
  0.566
CHK_3085
Aspartate aminotransferase.
  
    0.448
Your Current Organism:
Catabacter hongkongensis
NCBI taxonomy Id: 270498
Other names: C. hongkongensis, CCUG 54229, Catabacter hongkongensis Lau et al. 2014, JCM 17853, strain HKU16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.