STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHK_3112Hypothetical protein. (330 aa)    
Predicted Functional Partners:
CHK_3110
Hypothetical protein.
 
     0.932
CHK_3109
Transcriptional regulator, PadR family.
 
     0.849
CHK_3111
Hypothetical protein.
       0.762
CHK_3115
Hypothetical protein.
 
     0.706
CHK_0072
Putative calcium binding hemolysin protein.
  
     0.684
CHK_3203
Putative extracellular nuclease.
  
 
   0.671
CHK_3113
Hypothetical protein.
       0.618
CHK_3114
Hypothetical protein.
       0.618
CHK_0021
Putative internalin.
  
     0.612
CHK_3141
Hypothetical protein.
  
    0.607
Your Current Organism:
Catabacter hongkongensis
NCBI taxonomy Id: 270498
Other names: C. hongkongensis, CCUG 54229, Catabacter hongkongensis Lau et al. 2014, JCM 17853, strain HKU16
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.