STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHK_3203Putative extracellular nuclease. (864 aa)    
Predicted Functional Partners:
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
 
  0.895
cinA
Competence/damage-inducible protein CinA; Belongs to the CinA family.
    
  0.895
CHK_0021
Putative internalin.
  
  
 0.773
CHK_2193
Hypothetical protein.
  
   
 0.767
CHK_0577
Collagen adhesion protein.
 
 0.765
CHK_1958
Flagellar motor rotation protein MotB.
   
 0.754
CHK_1013
Cell surface protein.
  
     0.751
CHK_0028
Exopolysaccharide biosynthesis domain protein.
 
  
 0.733
CHK_1310
Hypothetical protein.
 
 
 
 0.728
CHK_3078
S-layer domain.
  
  
  0.721
Your Current Organism:
Catabacter hongkongensis
NCBI taxonomy Id: 270498
Other names: C. hongkongensis, CCUG 54229, Catabacter hongkongensis Lau et al. 2014, JCM 17853, strain HKU16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.