Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KRG28965.1Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1001 aa)    
Predicted Functional Partners:
KRG28964.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.873
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
  
  
 0.663
KRG28966.1
Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.615
KRG29270.1
Histidine ammonia-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.598
KRG27221.1
Histidine ammonia-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.598
KRG28963.1
rRNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
       0.544
KRG29605.1
Zinc carboxypeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.544
KRG30750.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.447
KRG28962.1
Peptidase M48; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.432
Your Current Organism:
Salegentibacter mishustinae
NCBI taxonomy Id: 270918
Other names: DSM 23404, KCTC 12263, KMM 6049, LMG 22584, LMG:22584, NBRC 100592, S. mishustinae, Salegentibacter mishustinae Nedashkovskaya et al. 2005
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