A0A067EDN2 protein (Citrus sinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A067EDN2

Uncharacterized protein. (110 aa)

Predicted Functional Partners:

A0A067FMT6

0.994

A0A067EJJ1

0.890

A0A067H1Q9

0.830

A0A067F067

0.718

A0A067GT00

0.709

A0A067DBE6

0.694

A0A067EDV8

0.660

A0A067GF57

0.659

A0A067D5X7

0.653

A0A067DSK3

0.653

Your Current Organism:

Citrus sinensis

NCBI taxonomy Id: 2711
Other names: Citrus sinensis (L.) Osbeck, Citrus x sinensis, Valencia orange, apfelsine, naranja, navel orange, sweet orange

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A067D5X7	A0A067DBE6	FtsJ domain-containing protein.	TRUD domain-containing protein.	0.666
A0A067D5X7	A0A067EDN2	FtsJ domain-containing protein.	Uncharacterized protein.	0.653
A0A067D5X7	A0A067EJJ1	FtsJ domain-containing protein.	tRNA (adenine(58)-N(1))-methyltransferase.	0.837
A0A067D5X7	A0A067F067	FtsJ domain-containing protein.	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.786
A0A067D5X7	A0A067FMT6	FtsJ domain-containing protein.	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	0.772
A0A067D5X7	A0A067GF57	FtsJ domain-containing protein.	SAM_MT_TRM5_TYW2 domain-containing protein.	0.708
A0A067D5X7	A0A067GT00	FtsJ domain-containing protein.	SAM-dependent MTase TRM10-type domain-containing protein.	0.666
A0A067D5X7	A0A067H1Q9	FtsJ domain-containing protein.	Uncharacterized protein.	0.760
A0A067DBE6	A0A067D5X7	TRUD domain-containing protein.	FtsJ domain-containing protein.	0.666
A0A067DBE6	A0A067DSK3	TRUD domain-containing protein.	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	0.666
A0A067DBE6	A0A067EDN2	TRUD domain-containing protein.	Uncharacterized protein.	0.694
A0A067DBE6	A0A067EDV8	TRUD domain-containing protein.	Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs.	0.680
A0A067DBE6	A0A067EJJ1	TRUD domain-containing protein.	tRNA (adenine(58)-N(1))-methyltransferase.	0.454
A0A067DBE6	A0A067F067	TRUD domain-containing protein.	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.744
A0A067DBE6	A0A067FMT6	TRUD domain-containing protein.	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	0.729
A0A067DBE6	A0A067GF57	TRUD domain-containing protein.	SAM_MT_TRM5_TYW2 domain-containing protein.	0.768
A0A067DBE6	A0A067GT00	TRUD domain-containing protein.	SAM-dependent MTase TRM10-type domain-containing protein.	0.607
A0A067DBE6	A0A067H1Q9	TRUD domain-containing protein.	Uncharacterized protein.	0.616
A0A067DSK3	A0A067DBE6	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	TRUD domain-containing protein.	0.666
A0A067DSK3	A0A067EDN2	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	Uncharacterized protein.	0.653