STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF73018.1Hypothetical protein. (152 aa)    
Predicted Functional Partners:
SHF72989.1
Hypothetical protein.
  
    0.773
SHG34670.1
PAS domain S-box-containing protein.
    
 0.693
SHF72971.1
RNA polymerase sigma-70 factor, ECF subfamily.
       0.690
SHG40678.1
Response regulator receiver domain-containing protein.
    
 0.684
SHF87430.1
LPS export ABC transporter protein LptC.
  
     0.562
SHF79693.1
Tetratricopeptide repeat-containing protein.
  
     0.535
SHG08347.1
Lipopolysaccharide-assembly.
  
     0.530
SHF79588.1
Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.
  
     0.523
SHG05646.1
Hypothetical protein.
  
     0.518
SHF96976.1
Hypothetical protein.
  
     0.511
Your Current Organism:
Flavobacterium segetis
NCBI taxonomy Id: 271157
Other names: DSM 19741, F. segetis, Flavobacterium segetis Yi and Chun 2006, Flavobacterium sp. AT1048, IMSNU 14050, JCM 12385, KCTC 12224, strain AT1048
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.