STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF84249.1Carbonic anhydrase or acetyltransferase, isoleucine patch superfamily. (174 aa)    
Predicted Functional Partners:
SHF72791.1
Carbonic anhydrase.
    
 0.840
SHF96023.1
Carbonic anhydrase.
    
 0.840
SHG43012.1
Carbonic anhydrase.
    
 0.840
SHF84264.1
Type IX secretion system membrane protein, PorP/SprF family.
       0.774
SHF96852.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
  0.642
pgk
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
  0.605
eno
Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
    
  0.585
SHF84282.1
Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain.
       0.576
SHG23146.1
Hypothetical protein.
    
  0.576
SHG30950.1
UDPglucose--hexose-1-phosphate uridylyltransferase.
    
  0.543
Your Current Organism:
Flavobacterium segetis
NCBI taxonomy Id: 271157
Other names: DSM 19741, F. segetis, Flavobacterium segetis Yi and Chun 2006, Flavobacterium sp. AT1048, IMSNU 14050, JCM 12385, KCTC 12224, strain AT1048
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.