STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF90240.1Gliding motility-associated C-terminal domain-containing protein. (3335 aa)    
Predicted Functional Partners:
SHF90259.1
Type IX secretion system membrane protein, PorP/SprF family.
 
     0.951
SHF74995.1
Gliding motility-associated C-terminal domain-containing protein.
  
  
  0.631
SHF74978.1
Gliding motility-associated C-terminal domain-containing protein.
  
  
  0.553
SHF74671.1
Hypothetical protein.
  
     0.463
SHF74724.1
Outer membrane cobalamin receptor protein.
  
     0.429
SHG28647.1
Hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.
  
  
  0.416
SHG10501.1
Hypothetical protein.
  
     0.414
SHG00266.1
Hypothetical protein.
  
     0.401
Your Current Organism:
Flavobacterium segetis
NCBI taxonomy Id: 271157
Other names: DSM 19741, F. segetis, Flavobacterium segetis Yi and Chun 2006, Flavobacterium sp. AT1048, IMSNU 14050, JCM 12385, KCTC 12224, strain AT1048
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