STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF98319.1Toxin YoeB. (90 aa)    
Predicted Functional Partners:
SHG01230.1
Antitoxin YefM; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
 
 0.951
SHF98304.1
Hypothetical protein.
       0.794
SHG01215.1
Toxin-antitoxin system, toxin component, Txe/YoeB family.
  
     0.774
SHF98334.1
Fe-S cluster assembly ATP-binding protein.
       0.754
SHF98287.1
Iron-regulated ABC transporter membrane component SufB.
       0.689
SHF98273.1
Iron-sulfur cluster assembly protein; Belongs to the HesB/IscA family.
       0.539
Your Current Organism:
Flavobacterium segetis
NCBI taxonomy Id: 271157
Other names: DSM 19741, F. segetis, Flavobacterium segetis Yi and Chun 2006, Flavobacterium sp. AT1048, IMSNU 14050, JCM 12385, KCTC 12224, strain AT1048
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.