Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHF77224.1 | SHF99455.1 | SAMN05444396_101313 | SAMN05444396_103313 | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase. | Uracil phosphoribosyltransferase. | 0.900 |
SHF77224.1 | SHG04742.1 | SAMN05444396_101313 | SAMN05444396_10419 | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase. | Orotidine-5'-phosphate decarboxylase. | 0.971 |
SHF77224.1 | SHG14846.1 | SAMN05444396_101313 | SAMN05444396_10573 | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase. | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase. | 0.919 |
SHF77224.1 | SHG38162.1 | SAMN05444396_101313 | SAMN05444396_11076 | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase. | Uridine kinase. | 0.900 |
SHF77224.1 | pyrH | SAMN05444396_101313 | SAMN05444396_10381 | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase. | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | 0.914 |
SHF77224.1 | surE | SAMN05444396_101313 | SAMN05444396_102172 | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase. | 5'-nucleotidase /3'-nucleotidase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.900 |
SHF87543.1 | SHG38162.1 | SAMN05444396_102194 | SAMN05444396_11076 | Ribonucleoside-diphosphate reductase alpha chain; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. | Uridine kinase. | 0.580 |
SHF87543.1 | ndk | SAMN05444396_102194 | SAMN05444396_101216 | Ribonucleoside-diphosphate reductase alpha chain; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.909 |
SHF87543.1 | pyrH | SAMN05444396_102194 | SAMN05444396_10381 | Ribonucleoside-diphosphate reductase alpha chain; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | 0.907 |
SHF99455.1 | SHF77224.1 | SAMN05444396_103313 | SAMN05444396_101313 | Uracil phosphoribosyltransferase. | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase. | 0.900 |
SHF99455.1 | SHG04742.1 | SAMN05444396_103313 | SAMN05444396_10419 | Uracil phosphoribosyltransferase. | Orotidine-5'-phosphate decarboxylase. | 0.924 |
SHF99455.1 | SHG14846.1 | SAMN05444396_103313 | SAMN05444396_10573 | Uracil phosphoribosyltransferase. | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase. | 0.900 |
SHF99455.1 | SHG38162.1 | SAMN05444396_103313 | SAMN05444396_11076 | Uracil phosphoribosyltransferase. | Uridine kinase. | 0.984 |
SHF99455.1 | pyrH | SAMN05444396_103313 | SAMN05444396_10381 | Uracil phosphoribosyltransferase. | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | 0.948 |
SHF99455.1 | surE | SAMN05444396_103313 | SAMN05444396_102172 | Uracil phosphoribosyltransferase. | 5'-nucleotidase /3'-nucleotidase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.911 |
SHF99455.1 | tsf | SAMN05444396_103313 | SAMN05444396_10280 | Uracil phosphoribosyltransferase. | Translation elongation factor Ts (EF-Ts); Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. | 0.505 |
SHG04742.1 | SHF77224.1 | SAMN05444396_10419 | SAMN05444396_101313 | Orotidine-5'-phosphate decarboxylase. | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase. | 0.971 |
SHG04742.1 | SHF99455.1 | SAMN05444396_10419 | SAMN05444396_103313 | Orotidine-5'-phosphate decarboxylase. | Uracil phosphoribosyltransferase. | 0.924 |
SHG04742.1 | SHG14846.1 | SAMN05444396_10419 | SAMN05444396_10573 | Orotidine-5'-phosphate decarboxylase. | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase. | 0.971 |
SHG04742.1 | SHG38162.1 | SAMN05444396_10419 | SAMN05444396_11076 | Orotidine-5'-phosphate decarboxylase. | Uridine kinase. | 0.902 |
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