STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG10022.1Delta-1-pyrroline-5-carboxylate dehydrogenase. (542 aa)    
Predicted Functional Partners:
SHG43926.1
Ornithine--oxo-acid transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  0.934
SHG10796.1
Glutamate synthase (NADH) large subunit.
  
 
 0.927
SHG22680.1
L-proline dehydrogenase.
 
 0.919
SHG10079.1
Aspartate aminotransferase.
   
  0.903
SHG05428.1
Aspartate aminotransferase.
   
  0.903
SHG28881.1
Glycine dehydrogenase; Belongs to the GcvP family.
   
 
 0.902
gcvT
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine.
   
 
 0.898
SHG10776.1
Glutamate synthase (NADH) small subunit.
    
 0.896
SHG34232.1
Formiminoglutamase; Belongs to the arginase family.
   
 
  0.895
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
   
 
 0.889
Your Current Organism:
Flavobacterium segetis
NCBI taxonomy Id: 271157
Other names: DSM 19741, F. segetis, Flavobacterium segetis Yi and Chun 2006, Flavobacterium sp. AT1048, IMSNU 14050, JCM 12385, KCTC 12224, strain AT1048
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