Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHF86339.1 | SHF94986.1 | SAMN05444396_102128 | SAMN05444396_10342 | Aspartate kinase. | Aspartate kinase; Belongs to the aspartokinase family. | 0.904 |
SHF86339.1 | SHG14315.1 | SAMN05444396_102128 | SAMN05444396_10548 | Aspartate kinase. | Aspartate kinase. | 0.996 |
SHF86339.1 | asd | SAMN05444396_102128 | SAMN05444396_102297 | Aspartate kinase. | Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. | 0.997 |
SHF86339.1 | dapA | SAMN05444396_102128 | SAMN05444396_105271 | Aspartate kinase. | 4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). | 0.879 |
SHF86339.1 | dapB | SAMN05444396_102128 | SAMN05444396_101432 | Aspartate kinase. | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. | 0.666 |
SHF86339.1 | dapF | SAMN05444396_102128 | SAMN05444396_11068 | Aspartate kinase. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.670 |
SHF86339.1 | lysA | SAMN05444396_102128 | SAMN05444396_104360 | Aspartate kinase. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.838 |
SHF86339.1 | murE | SAMN05444396_102128 | SAMN05444396_104266 | Aspartate kinase. | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.572 |
SHF94986.1 | SHF86339.1 | SAMN05444396_10342 | SAMN05444396_102128 | Aspartate kinase; Belongs to the aspartokinase family. | Aspartate kinase. | 0.904 |
SHF94986.1 | SHG14315.1 | SAMN05444396_10342 | SAMN05444396_10548 | Aspartate kinase; Belongs to the aspartokinase family. | Aspartate kinase. | 0.854 |
SHF94986.1 | asd | SAMN05444396_10342 | SAMN05444396_102297 | Aspartate kinase; Belongs to the aspartokinase family. | Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. | 0.980 |
SHF94986.1 | dapA | SAMN05444396_10342 | SAMN05444396_105271 | Aspartate kinase; Belongs to the aspartokinase family. | 4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). | 0.612 |
SHF94986.1 | dapB | SAMN05444396_10342 | SAMN05444396_101432 | Aspartate kinase; Belongs to the aspartokinase family. | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. | 0.555 |
SHF94986.1 | dapF | SAMN05444396_10342 | SAMN05444396_11068 | Aspartate kinase; Belongs to the aspartokinase family. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.597 |
SHF94986.1 | lysA | SAMN05444396_10342 | SAMN05444396_104360 | Aspartate kinase; Belongs to the aspartokinase family. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.948 |
SHG14315.1 | SHF86339.1 | SAMN05444396_10548 | SAMN05444396_102128 | Aspartate kinase. | Aspartate kinase. | 0.996 |
SHG14315.1 | SHF94986.1 | SAMN05444396_10548 | SAMN05444396_10342 | Aspartate kinase. | Aspartate kinase; Belongs to the aspartokinase family. | 0.854 |
SHG14315.1 | asd | SAMN05444396_10548 | SAMN05444396_102297 | Aspartate kinase. | Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. | 0.993 |
SHG14315.1 | dapA | SAMN05444396_10548 | SAMN05444396_105271 | Aspartate kinase. | 4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). | 0.848 |
SHG14315.1 | dapB | SAMN05444396_10548 | SAMN05444396_101432 | Aspartate kinase. | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. | 0.642 |
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