STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG13673.1Helix-turn-helix. (258 aa)    
Predicted Functional Partners:
SHG13638.1
DNA polymerase III, alpha subunit.
 
     0.878
dinB-2
DNA polymerase-4; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
 
     0.836
SHF75668.1
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
    
 0.752
SHG46919.1
Predicted ABC-type ATPase.
    
 
 0.738
SHG13690.1
DNA polymerase-3 subunit epsilon.
 
   
 0.587
SHG31009.1
Serine/threonine-protein kinase HipA.
  
   0.579
SHG31045.1
Serine/threonine-protein kinase HipA.
  
   0.579
SHG31061.1
Serine/threonine-protein kinase HipA.
  
   0.579
SHG38184.1
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.
  
  
 0.575
SHF71880.1
Glyoxylase, beta-lactamase superfamily II.
 
 
  0.548
Your Current Organism:
Flavobacterium segetis
NCBI taxonomy Id: 271157
Other names: DSM 19741, F. segetis, Flavobacterium segetis Yi and Chun 2006, Flavobacterium sp. AT1048, IMSNU 14050, JCM 12385, KCTC 12224, strain AT1048
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.