STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG16878.1Metal dependent phosphohydrolase. (200 aa)    
Predicted Functional Partners:
SHG16901.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
    0.911
SHG16912.1
Ferredoxin, 2Fe-2S.
 
    0.900
SHG16797.1
Pyruvate, water dikinase.
 
    0.854
SHG16767.1
Hypothetical protein; Belongs to the cytochrome P450 family.
 
    0.851
SHG16935.1
3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase subunit.
 
     0.836
SHG16843.1
HD domain-containing protein.
 
    
0.817
SHG16743.1
DNA-binding transcriptional activator of the SARP family.
 
     0.811
SHG16856.1
Succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase.
       0.773
SHG16785.1
Pyruvate, water dikinase.
 
    0.766
SHG17046.1
P-hydroxybenzoate 3-monooxygenase.
  
     0.647
Your Current Organism:
Flavobacterium segetis
NCBI taxonomy Id: 271157
Other names: DSM 19741, F. segetis, Flavobacterium segetis Yi and Chun 2006, Flavobacterium sp. AT1048, IMSNU 14050, JCM 12385, KCTC 12224, strain AT1048
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.