STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG27054.1Glycosyltransferase involved in cell wall bisynthesis. (336 aa)    
Predicted Functional Partners:
SHG27020.1
Nucleoside-diphosphate-sugar epimerase.
  
 
  0.649
SHG27037.1
Glycosyltransferase involved in cell wall bisynthesis.
 
 
  0.648
SHF74357.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.612
SHG27003.1
Hypothetical protein.
       0.511
SHG27073.1
Glycosyltransferase involved in cell wall bisynthesis.
       0.496
SHG27219.1
Nucleotidyl transferase.
  
  0.491
SHF87728.1
Por secretion system C-terminal sorting domain-containing protein; Belongs to the glycosyl hydrolase 13 family.
   
  0.473
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
  0.473
SHG37511.1
Alpha-amylase; Belongs to the glycosyl hydrolase 13 family.
   
  0.473
SHG27087.1
EpsG family protein.
 
    0.431
Your Current Organism:
Flavobacterium segetis
NCBI taxonomy Id: 271157
Other names: DSM 19741, F. segetis, Flavobacterium segetis Yi and Chun 2006, Flavobacterium sp. AT1048, IMSNU 14050, JCM 12385, KCTC 12224, strain AT1048
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