STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG42938.1Lycopene beta-cyclase. (405 aa)    
Predicted Functional Partners:
SHF78057.1
Phytoene desaturase.
 
 
 0.950
SHF86707.1
Electron transfer flavoprotein beta subunit.
  
 
 0.828
SHF86723.1
Electron transfer flavoprotein alpha subunit apoprotein.
  
 
 0.732
SHF78016.1
Beta-carotene 3-hydroxylase.
    
 0.724
SHF88789.1
Beta-carotene 3-hydroxylase.
    
 0.724
SHF88775.1
Phytoene desaturase.
 
 
 0.701
SHG42919.1
Uncaracterized surface protein containing fasciclin (FAS1) repeats.
       0.693
SHG21512.1
Amino acid adenylation domain-containing protein.
  
 
  0.586
SHG21531.1
Amino acid adenylation domain-containing protein.
  
 
  0.586
SHF78036.1
Phytoene/squalene synthetase.
  
 
 0.573
Your Current Organism:
Flavobacterium segetis
NCBI taxonomy Id: 271157
Other names: DSM 19741, F. segetis, Flavobacterium segetis Yi and Chun 2006, Flavobacterium sp. AT1048, IMSNU 14050, JCM 12385, KCTC 12224, strain AT1048
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