STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH49286.1Replication fork clamp-binding protein CrfC (dynamin-like GTPase family). (653 aa)    
Predicted Functional Partners:
htpX
Heat shock protein HtpX; Belongs to the peptidase M48B family.
     
 0.853
SEI00912.1
Hypothetical protein.
    
 0.776
SEH62109.1
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family.
    
 
 0.724
rpsK
SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
    
  0.697
SEI04748.1
Sulfite reductase (NADPH) flavoprotein alpha-component.
    
  0.694
SEI00050.1
Hypothetical protein.
   
 0.684
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
   
 
 0.648
hrpA
RNA helicase HrpA.
    
  0.643
hrpB
ATP-dependent helicase HrpB.
    
  0.643
SEI01326.1
Zn-dependent amino-or carboxypeptidase, M28 family.
     
 0.639
Your Current Organism:
Pseudomonas xanthomarina
NCBI taxonomy Id: 271420
Other names: CCUG 46543, DSM 18231, JCM 12468, NRIC 0617, P. xanthomarina, Pseudomonas xanthomarina Romanenko et al. 2005
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.