STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amiDN-acetylmuramoyl-L-alanine amidase. (258 aa)    
Predicted Functional Partners:
SEH50394.1
Diguanylate cyclase.
       0.544
SEH50407.1
Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.
       0.544
dsbA
Thiol:disulfide interchange protein DsbA.
       0.544
SEH61772.1
Hypothetical protein.
  
  
 0.472
SEH75156.1
Lipoprotein NlpD.
 
   
 0.453
pbpG
D-alanyl-D-alanine endopeptidase (penicillin-binding protein 7); Belongs to the peptidase S11 family.
     
 0.435
dacC
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family.
     
 0.435
SEH85802.1
Beta-lactamase class C.
  
  
 0.420
Your Current Organism:
Pseudomonas xanthomarina
NCBI taxonomy Id: 271420
Other names: CCUG 46543, DSM 18231, JCM 12468, NRIC 0617, P. xanthomarina, Pseudomonas xanthomarina Romanenko et al. 2005
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.