STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nirCCytochrome c55X. (113 aa)    
Predicted Functional Partners:
nirF
Protein NirF.
 
 0.997
SEH67310.1
DNA-binding transcriptional regulator, Lrp family.
 
  
 0.990
nirG
DNA-binding transcriptional regulator, Lrp family.
 
    0.990
nirD
DNA-binding transcriptional regulator, Lrp family.
 
    0.990
SEH51954.1
Cytochrome c oxidase subunit I+III.
  
 0.987
nirN
Cytochrome c, mono-and diheme variants.
 
 0.987
nirL
DNA-binding transcriptional regulator, Lrp family.
 
    0.986
SEH51970.1
Cytochrome c oxidase subunit 2.
  
 0.980
SEH82911.1
Cytochrome c oxidase subunit 2.
  
 0.980
SEH81533.1
Prokaryotic molybdopterin-containing oxidoreductase family, iron-sulfur binding subunit.
  
 0.976
Your Current Organism:
Pseudomonas xanthomarina
NCBI taxonomy Id: 271420
Other names: CCUG 46543, DSM 18231, JCM 12468, NRIC 0617, P. xanthomarina, Pseudomonas xanthomarina Romanenko et al. 2005
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.