STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH77652.13-phytase. (643 aa)    
Predicted Functional Partners:
SEH77635.1
TonB-dependent receptor.
 
     0.905
SEH77611.1
AraC-type DNA-binding protein.
 
     0.770
SEH77696.1
TonB family C-terminal domain-containing protein.
 
     0.718
SEH54463.1
Hypothetical protein.
    
 0.706
SEH77623.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
     0.669
SEH49840.1
Glycerophosphoryl diester phosphodiesterase.
 
  
  0.616
tolQ-2
Biopolymer transport protein TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
       0.592
tolR-2
Biopolymer transport protein TolR; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
       0.578
SEH77711.1
Hypothetical protein.
 
   
 0.558
SEH90763.1
Uncharacterized conserved protein.
 
  
 0.530
Your Current Organism:
Pseudomonas xanthomarina
NCBI taxonomy Id: 271420
Other names: CCUG 46543, DSM 18231, JCM 12468, NRIC 0617, P. xanthomarina, Pseudomonas xanthomarina Romanenko et al. 2005
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.