STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH84059.1SCP-2 sterol transfer family protein. (104 aa)    
Predicted Functional Partners:
SEH76441.1
Hypothetical protein.
  
     0.704
SEH84074.1
Broad specificity phosphatase PhoE.
       0.647
SEH80269.1
Uncharacterized protein; Belongs to the UPF0149 family.
  
     0.558
SEH54551.1
Hypothetical protein.
  
     0.499
SEH96135.1
Protein of unknown function.
  
     0.488
SEH93883.1
Calcineurin-like phosphoesterase.
  
     0.483
sohB
Serine protease SohB.
       0.479
yhfP
Alcohol dehydrogenase.
       0.471
SEH84038.1
Predicted kinase, aminoglycoside phosphotransferase (APT) family.
       0.469
SEH84021.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
       0.432
Your Current Organism:
Pseudomonas xanthomarina
NCBI taxonomy Id: 271420
Other names: CCUG 46543, DSM 18231, JCM 12468, NRIC 0617, P. xanthomarina, Pseudomonas xanthomarina Romanenko et al. 2005
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.