STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH87976.12,4-dienoyl-CoA reductase. (371 aa)    
Predicted Functional Partners:
gltB
Glutamate synthase (NADPH/NADH) large chain.
    
 0.745
etfB
Electron transfer flavoprotein beta subunit.
  
 
 0.702
fumA
Fumarase, class I, homodimeric; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
  0.688
nirN
Cytochrome c, mono-and diheme variants.
    
  0.639
etfA
Electron transfer flavoprotein alpha subunit apoprotein.
   
 
 0.627
narH
Respiratory nitrate reductase beta subunit.
    
   0.625
aldB
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.530
fadH
2,4-dienoyl-CoA reductase (NADPH2).
 
  
 
0.427
pqqB
Pyrroloquinoline quinone biosynthesis protein B; May be involved in the transport of PQQ or its precursor to the periplasm; Belongs to the PqqB family.
       0.413
sdhA
Succinate dehydrogenase subunit A; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
   
 0.401
Your Current Organism:
Pseudomonas xanthomarina
NCBI taxonomy Id: 271420
Other names: CCUG 46543, DSM 18231, JCM 12468, NRIC 0617, P. xanthomarina, Pseudomonas xanthomarina Romanenko et al. 2005
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.