STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH88397.1PQQ-dependent catabolism-associated beta-propeller protein. (323 aa)    
Predicted Functional Partners:
SEH88413.1
ABC-2 type transport system ATP-binding protein.
 
  
 0.957
SEH88360.1
ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system.
 
  
 0.942
nirC
Cytochrome c55X.
  
 0.934
SEH88432.1
ABC-2 type transport system permease protein.
 
   
 0.933
pedF
Cytochrome c-550 PedF.
 
  0.927
nirN
Cytochrome c, mono-and diheme variants.
  
  0.913
ccpA
Cytochrome c peroxidase.
  
 
 0.886
SEH88342.1
Hypothetical protein.
 
    0.882
ccoP-2
Cytochrome c oxidase cbb3-type subunit 3; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
  
 0.863
qedA
Alcohol dehydrogenase (cytochrome c).
 
 
  0.833
Your Current Organism:
Pseudomonas xanthomarina
NCBI taxonomy Id: 271420
Other names: CCUG 46543, DSM 18231, JCM 12468, NRIC 0617, P. xanthomarina, Pseudomonas xanthomarina Romanenko et al. 2005
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.