STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH88778.1UV-damage endonuclease. (342 aa)    
Predicted Functional Partners:
SEH59299.1
Uncharacterized protein YjlB.
 
     0.485
SEH81411.1
Glycine/D-amino acid oxidase.
  
     0.455
SEH88755.1
UvrD/REP helicase N-terminal domain-containing protein.
       0.426
SEH54358.1
NhaP-type Na+/H+ or K+/H+ antiporter.
  
     0.425
SEH91267.1
NhaP-type Na+/H+ or K+/H+ antiporter.
  
     0.424
SEH54264.1
Beta-glucosidase/6-phospho-beta- glucosidase/beta-galactosidase; Belongs to the glycosyl hydrolase 1 family.
  
     0.418
Your Current Organism:
Pseudomonas xanthomarina
NCBI taxonomy Id: 271420
Other names: CCUG 46543, DSM 18231, JCM 12468, NRIC 0617, P. xanthomarina, Pseudomonas xanthomarina Romanenko et al. 2005
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.