STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nicPOuter membrane porin, OprD family. (420 aa)    
Predicted Functional Partners:
SEH94379.1
Hypothetical protein; Manually curated.
  
     0.732
SEH84309.1
Protein of unknown function.
  
     0.708
SEH92698.1
Protein of unknown function.
  
     0.681
SEH79138.1
Hypothetical protein.
  
     0.680
SEH57730.1
Uncharacterized protein YjiK.
  
     0.673
SEH79585.1
Hypothetical protein.
  
     0.673
SEH93524.1
Uncharacterized membrane protein YqjE.
  
     0.671
SEI04692.1
Predicted secreted protein.
  
     0.660
SEI07080.1
Hypothetical protein.
  
     0.655
SEH97497.1
Protein of unknown function.
  
     0.653
Your Current Organism:
Pseudomonas xanthomarina
NCBI taxonomy Id: 271420
Other names: CCUG 46543, DSM 18231, JCM 12468, NRIC 0617, P. xanthomarina, Pseudomonas xanthomarina Romanenko et al. 2005
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.