STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH89639.1Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding Fis domains. (516 aa)    
Predicted Functional Partners:
rpoN
RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.938
SEH69725.1
PAS domain S-box-containing protein.
    
 0.848
SEH53967.1
PAS fold-containing protein.
 
  
 0.846
SEH66881.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
  
 
 0.843
SEH90956.1
Hypothetical protein.
 
  
 0.841
gacS
Two-component system, NarL family, sensor histidine kinase BarA.
    
 0.818
SEH51739.1
PAS domain S-box-containing protein.
    
 0.811
SEH91115.1
HAMP domain-containing protein.
    
 0.810
SEH77852.1
Na+/proline symporter.
    
 0.809
SEH52707.1
PAS domain S-box-containing protein.
    
 0.807
Your Current Organism:
Pseudomonas xanthomarina
NCBI taxonomy Id: 271420
Other names: CCUG 46543, DSM 18231, JCM 12468, NRIC 0617, P. xanthomarina, Pseudomonas xanthomarina Romanenko et al. 2005
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.