Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEH56692.1 | SEH95637.1 | SAMN05216535_0565 | SAMN05216535_2953 | phosphoribosyl-ATP pyrophosphatase. | Hypothetical protein. | 0.409 |
SEH56692.1 | hisZ | SAMN05216535_0565 | SAMN05216535_3790 | phosphoribosyl-ATP pyrophosphatase. | ATP phosphoribosyltransferase regulatory subunit; Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine. | 0.986 |
SEH95637.1 | SEH56692.1 | SAMN05216535_2953 | SAMN05216535_0565 | Hypothetical protein. | phosphoribosyl-ATP pyrophosphatase. | 0.409 |
SEH95637.1 | SEI02483.1 | SAMN05216535_2953 | SAMN05216535_3485 | Hypothetical protein. | 8-oxo-dGTP diphosphatase. | 0.409 |
SEH95637.1 | gpo | SAMN05216535_2953 | SAMN05216535_2954 | Hypothetical protein. | Glutathione peroxidase; Belongs to the glutathione peroxidase family. | 0.632 |
SEH95637.1 | hisZ | SAMN05216535_2953 | SAMN05216535_3790 | Hypothetical protein. | ATP phosphoribosyltransferase regulatory subunit; Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine. | 0.471 |
SEH95637.1 | ilvC | SAMN05216535_2953 | SAMN05216535_3569 | Hypothetical protein. | Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. | 0.467 |
SEH95637.1 | msrB | SAMN05216535_2953 | SAMN05216535_2955 | Hypothetical protein. | Peptide-methionine (R)-S-oxide reductase; Belongs to the MsrB Met sulfoxide reductase family. | 0.574 |
SEH95637.1 | yfbQ | SAMN05216535_2953 | SAMN05216535_2956 | Hypothetical protein. | Alanine-synthesizing transaminase. | 0.428 |
SEI02483.1 | SEH95637.1 | SAMN05216535_3485 | SAMN05216535_2953 | 8-oxo-dGTP diphosphatase. | Hypothetical protein. | 0.409 |
gpo | SEH95637.1 | SAMN05216535_2954 | SAMN05216535_2953 | Glutathione peroxidase; Belongs to the glutathione peroxidase family. | Hypothetical protein. | 0.632 |
gpo | msrB | SAMN05216535_2954 | SAMN05216535_2955 | Glutathione peroxidase; Belongs to the glutathione peroxidase family. | Peptide-methionine (R)-S-oxide reductase; Belongs to the MsrB Met sulfoxide reductase family. | 0.769 |
gpo | yfbQ | SAMN05216535_2954 | SAMN05216535_2956 | Glutathione peroxidase; Belongs to the glutathione peroxidase family. | Alanine-synthesizing transaminase. | 0.525 |
hisZ | SEH56692.1 | SAMN05216535_3790 | SAMN05216535_0565 | ATP phosphoribosyltransferase regulatory subunit; Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine. | phosphoribosyl-ATP pyrophosphatase. | 0.986 |
hisZ | SEH95637.1 | SAMN05216535_3790 | SAMN05216535_2953 | ATP phosphoribosyltransferase regulatory subunit; Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine. | Hypothetical protein. | 0.471 |
ilvC | SEH95637.1 | SAMN05216535_3569 | SAMN05216535_2953 | Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. | Hypothetical protein. | 0.467 |
msrB | SEH95637.1 | SAMN05216535_2955 | SAMN05216535_2953 | Peptide-methionine (R)-S-oxide reductase; Belongs to the MsrB Met sulfoxide reductase family. | Hypothetical protein. | 0.574 |
msrB | gpo | SAMN05216535_2955 | SAMN05216535_2954 | Peptide-methionine (R)-S-oxide reductase; Belongs to the MsrB Met sulfoxide reductase family. | Glutathione peroxidase; Belongs to the glutathione peroxidase family. | 0.769 |
msrB | yfbQ | SAMN05216535_2955 | SAMN05216535_2956 | Peptide-methionine (R)-S-oxide reductase; Belongs to the MsrB Met sulfoxide reductase family. | Alanine-synthesizing transaminase. | 0.564 |
yfbQ | SEH95637.1 | SAMN05216535_2956 | SAMN05216535_2953 | Alanine-synthesizing transaminase. | Hypothetical protein. | 0.428 |
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