STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI07423.1Lipopolysaccharide kinase (Kdo/WaaP) family protein. (473 aa)    
Predicted Functional Partners:
gcp
N6-L-threonylcarbamoyladenine synthase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
  
 0.973
waaP
Heptose I phosphotransferase; Catalyzes the phosphorylation of heptose(I) of the outer membrane lipopolysaccharide core; Belongs to the protein kinase superfamily. KdkA/rfaP family.
 
  
  0.963
SEI07431.1
Lipopolysaccharide kinase (Kdo/WaaP) family protein.
 
   
 0.953
waaG
UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase.
 
  
  0.922
SEI07413.1
Carbamoyltransferase.
 
     0.885
waaC
Heptosyltransferase-1.
 
  
 0.854
waaF
Heptosyltransferase-2.
 
  
 0.810
SEI07439.1
Lipopolysaccharide kinase (Kdo/WaaP) family protein.
     
 0.804
inaA
Lipopolysaccharide kinase (Kdo/WaaP) family protein.
 
   
 0.783
SEH57730.1
Uncharacterized protein YjiK.
  
     0.768
Your Current Organism:
Pseudomonas xanthomarina
NCBI taxonomy Id: 271420
Other names: CCUG 46543, DSM 18231, JCM 12468, NRIC 0617, P. xanthomarina, Pseudomonas xanthomarina Romanenko et al. 2005
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.