Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEI00050.1 | SEI07636.1 | SAMN05216535_3283 | SAMN05216535_3998 | Hypothetical protein. | malonyl-CoA O-methyltransferase. | 0.717 |
SEI00050.1 | bioF | SAMN05216535_3283 | SAMN05216535_4000 | Hypothetical protein. | 8-amino-7-oxononanoate synthase; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide. | 0.764 |
SEI00050.1 | visC | SAMN05216535_3283 | SAMN05216535_0116 | Hypothetical protein. | 2-octaprenylphenol hydroxylase. | 0.838 |
SEI07625.1 | SEI07636.1 | SAMN05216535_3997 | SAMN05216535_3998 | Dethiobiotin synthetase. | malonyl-CoA O-methyltransferase. | 0.987 |
SEI07625.1 | SEI07648.1 | SAMN05216535_3997 | SAMN05216535_3999 | Dethiobiotin synthetase. | Pimeloyl-[acyl-carrier protein] methyl ester esterase. | 0.921 |
SEI07625.1 | bioA | SAMN05216535_3997 | SAMN05216535_4095 | Dethiobiotin synthetase. | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Catalyzes the transfer of the alpha-amino group from S- adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. BioA subfamily. | 0.986 |
SEI07625.1 | bioB | SAMN05216535_3997 | SAMN05216535_4001 | Dethiobiotin synthetase. | Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. | 0.997 |
SEI07625.1 | bioF | SAMN05216535_3997 | SAMN05216535_4000 | Dethiobiotin synthetase. | 8-amino-7-oxononanoate synthase; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide. | 0.995 |
SEI07636.1 | SEI00050.1 | SAMN05216535_3998 | SAMN05216535_3283 | malonyl-CoA O-methyltransferase. | Hypothetical protein. | 0.717 |
SEI07636.1 | SEI07625.1 | SAMN05216535_3998 | SAMN05216535_3997 | malonyl-CoA O-methyltransferase. | Dethiobiotin synthetase. | 0.987 |
SEI07636.1 | SEI07648.1 | SAMN05216535_3998 | SAMN05216535_3999 | malonyl-CoA O-methyltransferase. | Pimeloyl-[acyl-carrier protein] methyl ester esterase. | 0.995 |
SEI07636.1 | bioA | SAMN05216535_3998 | SAMN05216535_4095 | malonyl-CoA O-methyltransferase. | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Catalyzes the transfer of the alpha-amino group from S- adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. BioA subfamily. | 0.647 |
SEI07636.1 | bioB | SAMN05216535_3998 | SAMN05216535_4001 | malonyl-CoA O-methyltransferase. | Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. | 0.975 |
SEI07636.1 | bioF | SAMN05216535_3998 | SAMN05216535_4000 | malonyl-CoA O-methyltransferase. | 8-amino-7-oxononanoate synthase; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide. | 0.986 |
SEI07636.1 | gcvP | SAMN05216535_3998 | SAMN05216535_0111 | malonyl-CoA O-methyltransferase. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.711 |
SEI07636.1 | metH | SAMN05216535_3998 | SAMN05216535_2225 | malonyl-CoA O-methyltransferase. | Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.605 |
SEI07636.1 | serB | SAMN05216535_3998 | SAMN05216535_3933 | malonyl-CoA O-methyltransferase. | Phosphoserine phosphatase. | 0.589 |
SEI07636.1 | visC | SAMN05216535_3998 | SAMN05216535_0116 | malonyl-CoA O-methyltransferase. | 2-octaprenylphenol hydroxylase. | 0.564 |
SEI07648.1 | SEI07625.1 | SAMN05216535_3999 | SAMN05216535_3997 | Pimeloyl-[acyl-carrier protein] methyl ester esterase. | Dethiobiotin synthetase. | 0.921 |
SEI07648.1 | SEI07636.1 | SAMN05216535_3999 | SAMN05216535_3998 | Pimeloyl-[acyl-carrier protein] methyl ester esterase. | malonyl-CoA O-methyltransferase. | 0.995 |
page 1 of 3